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Create a Runlist from data frame

Source: R/create.Runlist.R
ras.create.Runlist.Rd

Creates a Runlist from the standardized data frame supplied by/made in the Shiny app ras.RunlistGenerator().

Usage

ras.create.Runlist(
  full.list,
  blank.start = 3,
  blank.end = 5,
  blank.comp = 2,
  blank.type = 1,
  blank.max = 5
)

Arguments

full.list

A full list, according to the package template, to be transformed into a runlist.

blank.start

Integer of blanks to start with.

blank.end

Integer of blanks to end with.

blank.comp

Integer of blanks to insert between compounds.

blank.type

Integer of blanks to insert between well types.

blank.max

Max number of times to draw from the same blank well.

Value

Returns a Runlist with blanks spaced as defined (with sensible defaults).

See also

Other RunlistGenerator: ras.RunlistGenerator(), ras.add.blank(), ras.add.compound(), ras.add.type(), ras.darkModeDF_Options(), ras.dateSignAll.update(), ras.sanitizeInput(), ras.server(), ras.well.update()

Examples

# Setup
full.list = ras.Example_Runlist
head(full.list)
#> # A tibble: 6 × 14
#>   Index Plate Row     Col LC_Position Date     Signature Sample_name    Compound
#>   <dbl> <dbl> <chr> <dbl> <chr>       <chr>    <chr>     <chr>          <chr>   
#> 1     1     3 A         1 3:A,1       20220725 RH        20220725_RH_I… Paracet…
#> 2     2     3 A         2 3:A,2       20220725 RH        20220725_RH_I… Paracet…
#> 3     3     3 A         3 3:A,3       20220725 RH        20220725_RH_I… Paracet…
#> 4     4     3 A         4 3:A,4       20220725 RH        20220725_RH_I… Paracet…
#> 5     5     3 A         5 3:A,5       20220725 RH        20220725_RH_I… Paracet…
#> 6     6     3 A         6 3:A,6       20220725 RH        20220725_RH_I… Paracet…
#> # ℹ 5 more variables: Timepoint <chr>, Well_Type <chr>, LC_Well_Type <chr>,
#> #   Replicate <chr>, Sample_text <chr>

# Run function
Runlist1 <- ras.create.Runlist(full.list)
head(Runlist1)
#> # A tibble: 6 × 16
#>   Index Plate Row     Col LC_Position Date     Signature Sample_name    Compound
#>   <dbl> <dbl> <chr> <dbl> <chr>       <chr>    <chr>     <chr>          <chr>   
#> 1    13     3 B         1 3:B,1       20220725 RH        20220725_RH_I… NA      
#> 2    13     3 B         1 3:B,1       20220725 RH        20220725_RH_I… NA      
#> 3    13     3 B         1 3:B,1       20220725 RH        20220725_RH_I… NA      
#> 4    62     3 F         2 3:F,2       20220725 RH        20220725_RH_I… Ibuprof…
#> 5    63     3 F         3 3:F,3       20220725 RH        20220725_RH_I… Ibuprof…
#> 6    64     3 F         4 3:F,4       20220725 RH        20220725_RH_I… Ibuprof…
#> # ℹ 7 more variables: Timepoint <chr>, Well_Type <chr>, LC_Well_Type <chr>,
#> #   Replicate <chr>, Sample_text <chr>, Draw_Max <dbl>, Draw_Count <dbl>

Runlist2 <- ras.create.Runlist(full.list,
                               blank.start = 4,
                               blank.end   = 3,
                               blank.comp  = 2,
                               blank.type  = 1,
                               blank.max   = 6)
head(Runlist2)
#> # A tibble: 6 × 16
#>   Index Plate Row     Col LC_Position Date     Signature Sample_name    Compound
#>   <dbl> <dbl> <chr> <dbl> <chr>       <chr>    <chr>     <chr>          <chr>   
#> 1    13     3 B         1 3:B,1       20220725 RH        20220725_RH_I… NA      
#> 2    13     3 B         1 3:B,1       20220725 RH        20220725_RH_I… NA      
#> 3    13     3 B         1 3:B,1       20220725 RH        20220725_RH_I… NA      
#> 4    13     3 B         1 3:B,1       20220725 RH        20220725_RH_I… NA      
#> 5    62     3 F         2 3:F,2       20220725 RH        20220725_RH_I… Ibuprof…
#> 6    63     3 F         3 3:F,3       20220725 RH        20220725_RH_I… Ibuprof…
#> # ℹ 7 more variables: Timepoint <chr>, Well_Type <chr>, LC_Well_Type <chr>,
#> #   Replicate <chr>, Sample_text <chr>, Draw_Max <dbl>, Draw_Count <dbl>