Currently not functional!
Usage
ras.Fic_workflow(
source = c("Waters", "Sciex"),
ID = "Sample_ID",
values = "Conc.",
Buffer = "HBSS",
Dilution_type = "[:digit:]x",
Dilution_extract = "[:digit:]+(?=x)",
stab = "Stab",
czero = "Czero",
prot_cell_value = "mg_Protein",
prot_cell_type = "Cells",
prot_hom_value = "Protein_conc._mg/mL",
prot_hom_type = "hom",
V.medium = 200,
MassBalance_2.5 = 1.75,
.compound = "Analyte Peak Name",
.checkValues = TRUE,
prot_.split = "Sample Text",
.summarize = TRUE,
.SD = TRUE
)Arguments
- source
What source the data file comes from
- ID
Column name for ID column after splitting
- values
Column name for values in data
- Buffer
RegEx to filter by for buffer values
- Dilution_type
RegEx to filter by for dilution factor values
- Dilution_extract
RegEx for extracting the dilution factor
- stab
RegEx to filter by for stability values
- czero
RegEx to filter by for C zero values
- prot_cell_value
Column name for values
- prot_cell_type
RegEx to filter by
- prot_hom_value
RegEx to filter by
- prot_hom_type
RegEx to filter by
- V.medium
RegEx to filter by
- MassBalance_2.5
Factor for calulating Mass Balance 10.2.5
- .compound
Column name for compounds to prefix Sample_ID,
NULL=> "Analyte Peak Name"- .checkValues
Removes "<" from the values column to make sure it can be coerced to numeric.
- prot_.split
Column name to split for samples in protein dataframe
- .summarize
Summarize values into averages
- .SD
Create column with Standard Deviation